BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB018F05SP1|AL427350
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1774 1114 0.0
3x_Contig87 350 3e-96
>3x_Contig1774
Length = 27771
Score = 1114 bits (551), Expect = 0.0
Identities = 597/615 (97%), Gaps = 2/615 (0%)
Strand = Plus / Plus
Query: 315 tcattacgccttggagagagagttcttagtagtttatcagcggaataaatgamaggmatg 374
||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||| |||
Sbjct: 39 tcattacgccttggagagagagttcgtagtagtgtatcagcggaataaatgaaaggaatg 98
Query: 375 ctatgaggaagttgataaagccgatttgatttgatcggcatcagtgcttttytttatatt 434
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 99 ctatgaggaagttgataaagccgatttgatttgatcggcatcagtgcttggttttatatt 158
Query: 435 cgtgaactgtctctaaagaagggtcttttgatttattgtttgtgattttcttgttttcaa 494
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 159 cgtgaactgtctctaaagaagggtcttttgatttattgtgtgggattttcttgttttcaa 218
Query: 495 ttgaagagaagattatactgtttcaatttgggaagamgcactgtcgtgcaacttgccaga 554
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 219 ttgaagagaagattatactgtttcaatttgggaagaaag-ctgtcgtgcaacttgccaga 277
Query: 555 mgttgcagcatatctggatggmtcgatttcaccgtggtattcttcactgatttgttcaag 614
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 278 agttgcagcatatctggatggatcgatttcaccgtggtattcttcactgatttgttcaag 337
Query: 615 ggtttttctctttgtttctggaatcaacaaagtggtgaagatacctaacaacatgaacaa 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ggtttttctctttgtttctggaatcaacaaagtggtgaagatacctaacaacatgaacaa 397
Query: 675 agcgaaaatttccataacgtgaggtaaccaacagttcttcttcaaaccgtctctagcaca 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 agcgaaaatttccataacgtgaggtaaccaacagttcttcttcaaaccgtctctagcaca 457
Query: 735 gttgtggtcgattagagtacccaaagcggtttgggcaatgatggca-cmatcttaccaga 793
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 458 gttgtggtcgattagagtacccaaagcggtttgggcaatgatggcaccaatcttaccaga 517
Query: 794 agctgctgaaataccatgtgcggaagatctgtatctagttgggaaacattcaccaggaac 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 agctgctgaaataccatgtgcggaagatctgtatctagttgggaaacattcaccaggaac 577
Query: 854 gatgaaggttgtaacgttaggaccgaagttgaagaaaaattgacacaagacgtacaatgc 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 gatgaaggttgtaacgttaggaccgaagttgaagaaaaattgacacaagacgtacaatgc 637
Query: 914 taatagamcatggtc 928
||||||| |||||||
Sbjct: 638 taatagaccatggtc 652
>3x_Contig87
Length = 944
Score = 350 bits (173), Expect = 3e-96
Identities = 179/181 (98%)
Strand = Plus / Minus
Query: 1 acgtggaagataaattcctgctaaatcaaatattatccgaatcgggtaatacagatatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 acgtggaagataaattcctgctaaatcaaatattatccgaatcgggtaatacagatatat 122
Query: 61 tacccattccagacatgagattcttggtcacgtgctagataatatgtttactccgggtta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tacccattccagacatgagattcttggtcacgtgctagataatatgtttactccgggtta 62
Query: 121 cattttccattatttttgctgatgagattcaacaaggaatgatgggtaaagcaagataga 180
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 61 cattttccattatttttgctgatgagaatcaacaaggaatgatgggtaaagccagataga 2
Query: 181 t 181
|
Sbjct: 1 t 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.40 0.715 1.33
Gapped
Lambda K H
1.40 0.715 1.33
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9821
Number of Sequences: 1807
Number of extensions: 9821
Number of successful extensions: 192
Number of sequences better than 1.0e-20: 2
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.3 bits)
S1: 12 (24.8 bits)
S2: 49 (99.6 bits)